Index

_

__bool__() (corelay.io.DataStorageBase method) (corelay.io.NoStorage method) (corelay.io.storage.DataStorageBase method) (corelay.io.storage.NoStorage method) __call__() (corelay.pipeline.base.Task method) (corelay.plugboard.Slot method) (corelay.processor.base.Processor method) __delete__() (corelay.plugboard.Slot method) __dir__() (corelay.plugboard.SlotDefaultAccess method) __enter__() (corelay.io.DataStorageBase method) (corelay.io.storage.DataStorageBase method) __exit__() (corelay.io.DataStorageBase method) (corelay.io.storage.DataStorageBase method) __get__() (corelay.plugboard.Slot method) (corelay.plugboard.SlotDefaultAccess method) __getitem__() (corelay.io.DataStorageBase method) (corelay.io.storage.DataStorageBase method) __init__() (corelay.base.Param method) (corelay.io.DataStorageBase method) (corelay.io.hashing.SupportsConversionToNumPyArray method) (corelay.io.HDF5Storage method) (corelay.io.NoDataSource method) (corelay.io.NoDataTarget method) (corelay.io.PickleStorage method) (corelay.io.storage.DataStorageBase method) (corelay.io.storage.HashedHDF5 method) (corelay.io.storage.HDF5Storage method) (corelay.io.storage.NoDataSource method) (corelay.io.storage.NoDataTarget method) (corelay.io.storage.PickleStorage method) (corelay.io.storage.Storable method) (corelay.pipeline.base.Task method) (corelay.pipeline.base.TaskPlug method) (corelay.plugboard.EmptyInit method) (corelay.plugboard.Plug method) (corelay.plugboard.Plugboard method) (corelay.plugboard.Slot method) (corelay.plugboard.SlotDefaultAccess method) (corelay.processor.base.Processor method) (corelay.processor.embedding.UMAP method) __new__() (corelay.io.storage.StringInfo static method) (corelay.tracker.MetaTracker static method) __prepare__() (corelay.tracker.MetaTracker class method) __repr__() (corelay.base.Param method) (corelay.io.storage.StringInfo method) (corelay.pipeline.base.Pipeline method) (corelay.pipeline.base.Task method) (corelay.plugboard.Slot method) (corelay.processor.base.Processor method) (corelay.processor.embedding.UMAP method)

__set__() (corelay.plugboard.Slot method) (corelay.plugboard.SlotDefaultAccess method) __set_name__() (corelay.plugboard.Slot method) __setitem__() (corelay.io.DataStorageBase method) (corelay.io.storage.DataStorageBase method) __tracked__ (corelay.io.DataStorageBase attribute) (corelay.io.HDF5Storage attribute) (corelay.io.NoStorage attribute) (corelay.io.PickleStorage attribute) (corelay.io.storage.DataStorageBase attribute) (corelay.io.storage.HDF5Storage attribute) (corelay.io.storage.NoStorage attribute) (corelay.io.storage.PickleStorage attribute) (corelay.pipeline.base.Pipeline attribute) (corelay.pipeline.spectral.SpectralClustering attribute) (corelay.pipeline.spectral.SpectralEmbedding attribute) (corelay.plugboard.Plugboard attribute) (corelay.processor.affinity.Affinity attribute) (corelay.processor.affinity.RadialBasisFunction attribute) (corelay.processor.affinity.SparseKNN attribute) (corelay.processor.base.FunctionProcessor attribute) (corelay.processor.base.Processor attribute) (corelay.processor.clustering.AgglomerativeClustering attribute) (corelay.processor.clustering.Clustering attribute) (corelay.processor.clustering.DBSCAN attribute) (corelay.processor.clustering.Dendrogram attribute) (corelay.processor.clustering.HDBSCAN attribute) (corelay.processor.clustering.KMeans attribute) (corelay.processor.distance.Distance attribute) (corelay.processor.distance.SciPyPDist attribute) (corelay.processor.embedding.EigenDecomposition attribute) (corelay.processor.embedding.Embedding attribute) (corelay.processor.embedding.LLEEmbedding attribute) (corelay.processor.embedding.PCAEmbedding attribute) (corelay.processor.embedding.TSNEEmbedding attribute) (corelay.processor.embedding.UMAPEmbedding attribute) (corelay.processor.flow.GroupProcessor attribute) (corelay.processor.flow.Parallel attribute) (corelay.processor.flow.Sequential attribute) (corelay.processor.flow.Shaper attribute) (corelay.processor.laplacian.Laplacian attribute) (corelay.processor.laplacian.RandomWalkNormalLaplacian attribute) (corelay.processor.laplacian.SymmetricNormalLaplacian attribute) (corelay.processor.preprocessing.Histogram attribute) (corelay.processor.preprocessing.ImagePreProcessor attribute) (corelay.processor.preprocessing.Pooling attribute) (corelay.processor.preprocessing.PreProcessor attribute) (corelay.processor.preprocessing.Rescale attribute) (corelay.processor.preprocessing.Resize attribute) (corelay.tracker.Tracker attribute)

A

a1ifmat() (in module corelay.processor.laplacian) Affinity (class in corelay.processor.affinity) affinity (corelay.pipeline.spectral.SpectralEmbedding attribute)

AgglomerativeClustering (class in corelay.processor.clustering) at() (corelay.io.DataStorageBase method) (corelay.io.storage.DataStorageBase method)

B

base (corelay.io.storage.HashedHDF5 attribute) bind_method (corelay.processor.base.FunctionProcessor attribute)

bins (corelay.processor.preprocessing.Histogram attribute) broadcast (corelay.processor.flow.Parallel attribute)

C

channels_first (corelay.processor.preprocessing.Histogram attribute) (corelay.processor.preprocessing.ImagePreProcessor attribute) checkpoint_data (corelay.processor.base.Processor attribute) checkpoint_processes() (corelay.pipeline.base.Pipeline method) children (corelay.processor.flow.GroupProcessor attribute) close() (corelay.io.DataStorageBase method) (corelay.io.storage.DataStorageBase method) Clustering (class in corelay.processor.clustering) clustering (corelay.pipeline.spectral.SpectralClustering attribute) collect() (corelay.tracker.Tracker class method) collect_attr() (corelay.tracker.Tracker method) copy() (corelay.processor.base.Processor method) corelay.base module corelay.io module corelay.io.hashing module corelay.io.storage module corelay.pipeline module corelay.pipeline.base module corelay.pipeline.spectral module

corelay.plugboard module corelay.processor module corelay.processor.affinity module corelay.processor.base module corelay.processor.clustering module corelay.processor.distance module corelay.processor.embedding module corelay.processor.flow module corelay.processor.laplacian module corelay.processor.preprocessing module corelay.tracker module corelay.utils module

D

data (corelay.io.PickleStorage attribute) (corelay.io.storage.PickleStorage attribute) data_key (corelay.io.HDF5Storage attribute) (corelay.io.PickleStorage attribute) (corelay.io.storage.HDF5Storage attribute) (corelay.io.storage.PickleStorage attribute) DataStorageBase (class in corelay.io) (class in corelay.io.storage) DBSCAN (class in corelay.processor.clustering) default (corelay.pipeline.base.Task property) (corelay.pipeline.base.TaskPlug property) (corelay.plugboard.Plug property) (corelay.plugboard.Plugboard attribute) (corelay.plugboard.Slot property)

Dendrogram (class in corelay.processor.clustering) Distance (class in corelay.processor.distance) dtype (corelay.plugboard.Plug property) (corelay.plugboard.Slot property) dummy_from_module_import() (in module corelay.utils) dummy_import_module() (in module corelay.utils)

E

early_exaggeration (corelay.processor.embedding.TSNEEmbedding attribute) EigenDecomposition (class in corelay.processor.embedding) Embedding (class in corelay.processor.embedding) embedding (corelay.pipeline.spectral.SpectralEmbedding attribute) EmptyInit (class in corelay.plugboard) encoding (corelay.io.storage.StringInfo attribute) ensure_processor() (in module corelay.processor.base) eps (corelay.processor.clustering.DBSCAN attribute)

exists() (corelay.io.DataStorageBase method) (corelay.io.HDF5Storage method) (corelay.io.NoStorage method) (corelay.io.PickleStorage method) (corelay.io.storage.DataStorageBase method) (corelay.io.storage.HDF5Storage method) (corelay.io.storage.NoStorage method) (corelay.io.storage.PickleStorage method) ext_hash() (in module corelay.io.hashing)

F

fallback (corelay.plugboard.Plug property) filter (corelay.processor.preprocessing.ImagePreProcessor attribute) fit() (corelay.processor.embedding.UMAP method) fit_transform() (corelay.processor.embedding.UMAP method) from_checkpoint() (corelay.pipeline.base.Pipeline method) function() (corelay.pipeline.base.Pipeline method) (corelay.processor.affinity.RadialBasisFunction method) (corelay.processor.affinity.SparseKNN method) (corelay.processor.base.FunctionProcessor method) (corelay.processor.base.Processor method) (corelay.processor.clustering.AgglomerativeClustering method) (corelay.processor.clustering.DBSCAN method) (corelay.processor.clustering.Dendrogram method) (corelay.processor.clustering.HDBSCAN method) (corelay.processor.clustering.KMeans method) (corelay.processor.distance.SciPyPDist method) (corelay.processor.embedding.EigenDecomposition method) (corelay.processor.embedding.LLEEmbedding method) (corelay.processor.embedding.PCAEmbedding method) (corelay.processor.embedding.TSNEEmbedding method) (corelay.processor.embedding.UMAPEmbedding method) (corelay.processor.flow.Parallel method) (corelay.processor.flow.Sequential method) (corelay.processor.flow.Shaper method) (corelay.processor.laplacian.RandomWalkNormalLaplacian method) (corelay.processor.laplacian.SymmetricNormalLaplacian method) (corelay.processor.preprocessing.Histogram method) (corelay.processor.preprocessing.Pooling method) (corelay.processor.preprocessing.Rescale method) (corelay.processor.preprocessing.Resize method)

FunctionProcessor (class in corelay.processor.base)

G

get() (corelay.tracker.Tracker class method) get_attr() (corelay.tracker.Tracker method) get_fully_qualified_name() (in module corelay.utils)

get_lambda_expression_source_code() (in module corelay.utils) get_object_representation() (in module corelay.utils) get_plug() (corelay.plugboard.Slot method) GroupProcessor (class in corelay.processor.flow)

H

HashedHDF5 (class in corelay.io.storage) Hasher (class in corelay.io.hashing) HashPickler (class in corelay.io.hashing) HDBSCAN (class in corelay.processor.clustering)

hdbscan (in module corelay.processor.clustering) HDF5Storage (class in corelay.io) (class in corelay.io.storage) height (corelay.processor.preprocessing.Resize attribute) Histogram (class in corelay.processor.preprocessing)

I

identifiers() (corelay.processor.base.Processor method) ImagePreProcessor (class in corelay.processor.preprocessing) import_or_stub() (in module corelay.utils) index (corelay.processor.clustering.KMeans attribute) indices (corelay.processor.flow.Shaper attribute) inverse_transform() (corelay.processor.embedding.UMAP method) io (corelay.io.DataStorageBase attribute) (corelay.io.HDF5Storage attribute) (corelay.io.PickleStorage attribute) (corelay.io.storage.DataStorageBase attribute) (corelay.io.storage.HDF5Storage attribute) (corelay.io.storage.NoStorage attribute) (corelay.io.storage.PickleStorage attribute) (corelay.processor.base.Processor attribute)

is_checkpoint (corelay.processor.base.Processor attribute) is_identifier (corelay.base.Param property) is_output (corelay.processor.base.Processor attribute) is_positional (corelay.base.Param property)

K

keys() (corelay.io.DataStorageBase method) (corelay.io.HDF5Storage method) (corelay.io.NoStorage method) (corelay.io.PickleStorage method) (corelay.io.storage.DataStorageBase method) (corelay.io.storage.HDF5Storage method) (corelay.io.storage.NoStorage method) (corelay.io.storage.PickleStorage method)

KMeans (class in corelay.processor.clustering) kwargs (corelay.processor.clustering.Clustering attribute) (corelay.processor.embedding.Embedding attribute) (corelay.processor.preprocessing.PreProcessor attribute)

L

Laplacian (class in corelay.processor.laplacian) laplacian (corelay.pipeline.spectral.SpectralEmbedding attribute) length (corelay.io.storage.StringInfo attribute)

linkage (corelay.processor.clustering.AgglomerativeClustering attribute) (corelay.processor.clustering.Dendrogram attribute) LLEEmbedding (class in corelay.processor.embedding)

M

m_kwargs (corelay.processor.distance.SciPyPDist attribute) MetaTracker (class in corelay.tracker) metric (corelay.processor.clustering.AgglomerativeClustering attribute) (corelay.processor.clustering.DBSCAN attribute) (corelay.processor.clustering.Dendrogram attribute) (corelay.processor.clustering.HDBSCAN attribute) (corelay.processor.distance.SciPyPDist attribute) (corelay.processor.embedding.TSNEEmbedding attribute) (corelay.processor.embedding.UMAPEmbedding attribute) min_dist (corelay.processor.embedding.UMAPEmbedding attribute) min_samples (corelay.processor.clustering.DBSCAN attribute) module corelay.base corelay.io corelay.io.hashing corelay.io.storage corelay.pipeline corelay.pipeline.base corelay.pipeline.spectral corelay.plugboard corelay.processor corelay.processor.affinity corelay.processor.base corelay.processor.clustering corelay.processor.distance corelay.processor.embedding corelay.processor.flow corelay.processor.laplacian corelay.processor.preprocessing corelay.tracker corelay.utils

N

n_clusters (corelay.processor.clustering.AgglomerativeClustering attribute) (corelay.processor.clustering.HDBSCAN attribute) (corelay.processor.clustering.KMeans attribute) n_components (corelay.processor.embedding.LLEEmbedding attribute) (corelay.processor.embedding.PCAEmbedding attribute) (corelay.processor.embedding.TSNEEmbedding attribute) n_eigval (corelay.processor.embedding.EigenDecomposition attribute) n_neighbors (corelay.processor.affinity.SparseKNN attribute) (corelay.processor.embedding.LLEEmbedding attribute) (corelay.processor.embedding.UMAPEmbedding attribute)

NoDataSource, [1] NoDataTarget, [1] normalize (corelay.processor.embedding.EigenDecomposition attribute) NoStorage (class in corelay.io) (class in corelay.io.storage) numpy() (corelay.io.hashing.SupportsConversionToNumPyArray method) (corelay.io.hashing.TensorPlaceholder method) numpy_id() (corelay.io.hashing.HashPickler static method)

O

obj (corelay.pipeline.base.TaskPlug property) (corelay.plugboard.Plug property)

optional (corelay.plugboard.Plug property) (corelay.plugboard.Slot property) output_file (corelay.processor.clustering.Dendrogram attribute)

P

pairwise_distance (corelay.pipeline.spectral.SpectralEmbedding attribute) Parallel (class in corelay.processor.flow) Param (class in corelay.base) param_values() (corelay.processor.base.Processor method) PCAEmbedding (class in corelay.processor.embedding) perplexity (corelay.processor.embedding.TSNEEmbedding attribute) persistent_id() (corelay.io.hashing.HashPickler method) PickleStorage (class in corelay.io) (class in corelay.io.storage)

Pipeline (class in corelay.pipeline.base) Plug (class in corelay.plugboard) Plugboard (class in corelay.plugboard) Pooling (class in corelay.processor.preprocessing) pooling_function (corelay.processor.preprocessing.Pooling attribute) preprocessing (corelay.pipeline.spectral.SpectralEmbedding attribute) PreProcessor (class in corelay.processor.preprocessing) processing_function (corelay.processor.base.FunctionProcessor attribute) Processor (class in corelay.processor.base)

R

RadialBasisFunction (class in corelay.processor.affinity) RandomWalkNormalLaplacian (class in corelay.processor.laplacian) read() (corelay.io.DataStorageBase method) (corelay.io.HDF5Storage method) (corelay.io.NoStorage method) (corelay.io.PickleStorage method) (corelay.io.storage.DataStorageBase method) (corelay.io.storage.HashedHDF5 method) (corelay.io.storage.HDF5Storage method) (corelay.io.storage.NoStorage method) (corelay.io.storage.PickleStorage method) (corelay.io.storage.Storable method)

RecursiveHashTuple (in module corelay.io.storage) RecursiveNumPyArrayTuple (in module corelay.io.storage) Rescale (class in corelay.processor.preprocessing) reset_defaults() (corelay.plugboard.Plugboard method) Resize (class in corelay.processor.preprocessing)

S

scale (corelay.processor.preprocessing.Rescale attribute) SciPyPDist (class in corelay.processor.distance) select_eigenvector (corelay.pipeline.spectral.SpectralClustering attribute) Sequential (class in corelay.processor.flow) set_fit_request() (corelay.processor.embedding.UMAP method) set_transform_request() (corelay.processor.embedding.UMAP method) Shaper (class in corelay.processor.flow) sigma (corelay.processor.affinity.RadialBasisFunction attribute) Slot (class in corelay.plugboard) slot (corelay.plugboard.Plug property)

SlotDefaultAccess (class in corelay.plugboard) SparseKNN (class in corelay.processor.affinity) SpectralClustering (class in corelay.pipeline.spectral) SpectralEmbedding (class in corelay.pipeline.spectral) Storable (class in corelay.io.storage) stride (corelay.processor.preprocessing.Pooling attribute) StringInfo (class in corelay.io.storage) SupportsConversionToNumPyArray (class in corelay.io.hashing) symmetric (corelay.processor.affinity.SparseKNN attribute) SymmetricNormalLaplacian (class in corelay.processor.laplacian)

T

Task (class in corelay.pipeline.base) TaskPlug (class in corelay.pipeline.base) Tensor (in module corelay.io.hashing)

TensorPlaceholder (class in corelay.io.hashing) Tracker (class in corelay.tracker) transform() (corelay.processor.embedding.UMAP method) TSNEEmbedding (class in corelay.processor.embedding)

U

UMAP (class in corelay.processor.embedding)

UMAPEmbedding (class in corelay.processor.embedding) update_defaults() (corelay.plugboard.Plugboard method)

W

which (corelay.processor.embedding.EigenDecomposition attribute) whiten (corelay.processor.embedding.PCAEmbedding attribute) width (corelay.processor.preprocessing.Resize attribute) write() (corelay.io.DataStorageBase method) (corelay.io.hashing.Hasher method) (corelay.io.HDF5Storage method) (corelay.io.NoStorage method) (corelay.io.PickleStorage method) (corelay.io.storage.DataStorageBase method) (corelay.io.storage.HashedHDF5 method) (corelay.io.storage.HDF5Storage method) (corelay.io.storage.NoStorage method) (corelay.io.storage.PickleStorage method) (corelay.io.storage.Storable method)

Z

zip_equal() (in module corelay.utils)